Accelerate Drug Discovery with Pre-built In Silico Pipelines

Launch proven, auditable in silico pipelines in minutes—powered by industry-standard tools encapsulated as intelligent agents with complete traceability.

Easily swap any agent within a pipeline for your own models or commercial solutions as needed.

Example Small Molecule Hit Identification and Lead Optimization Pipeline

Protein Preparation. Prepare target structures 

Physics based assessment of Protein conformations. Proteins aren’t fixed entities, so this identifies various conformations the protein may have for downstream pocket identification.

High-throughput Docking. Identify druggable pockets, generate de novo molecules, screen them for desirable properties and then simulate docking.

Expand Candidate Pool. Expand promising candidates, filter and dock again.

Input
Target protein structure (PDB or predicted), compound library
Output

Ranked, filtered hit list of ligands with binding poses, scores, and complete traceability which could then be passed to your LIMS/ELN for screening assessment.

This pipeline supports DiffDock out of the box but also commercial docking engines such as Schrödinger’s Glide, OpenEye’s FRED under bring-your-own-license (BYOL) arrangements. 

Other Pipelines
01
SAR/SPR Modeling

Iteratively improve the properties of existing lead molecules for improved potency, selectivity, ADMET (Absorption, Distribution, Metabolism, Excretion, Toxicity) properties, and synthetic accessibility,.

02
Developing a Therapeutic Ab

This pipeline unifies data mining, genomic analysis, and protein modeling to identify and validate monoclonal antibody targets for treating diseases.

03
Antibody Lead Identification 

Design, identify, and prioritize antibody leads against a target, and facilitate their experimental validation

04
Cell and Gene Therapy Target ID

Integrates genomics, transcriptomics, and proteomics data to pinpoint the right targets, the right cells, and the right markers for any disease

05
Compound Screening at Scale

Pre-Screen 10’s of millions of compounds for druggability, ADME, toxicity, solubility and other key properties.  This filtered list can then be fed into other SigmaticOS pipelines to make them more efficient.

06
 Immunogenicity Assessment

Assess immune system response to known entities such as antibody’s in silico.

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